Mathematical modelling of microbiomes

from Wednesday, 14 September 2022 (09:00) to Friday, 16 September 2022 (21:15)


        : Sessions
    /     : Talks
        : Breaks
14 Sep 2022
15 Sep 2022
16 Sep 2022
AM
09:00 --- Welcome (Check-In) ---
09:45 Introduction   ()
10:00
Keynote - Isabel Gordo (Instituto Gulbenkian de Ciência ) (until 11:00) ()
10:00 The tempo and mode of evolution of a strain in the mammalian gut microbiota - Isabel Gordo (Instituto Gulbenkian de Ciência)   ()
11:00 Stabilization of microbiomes by stochastic and responsive phenotypic switching - Pierre Haas (Max Planck Institutes for the Physics of Complex Systems & of Molecular Cell Biology and Genetics )   ()
11:30 Plasmidome multilayer networks reveal potential pathways of gene transmission across microbiomes - Shai Pilosof (Ben Gurion University of the Negev )   ()
09:00
Keynote - Nicole Vega (Emory University) (until 10:00) ()
09:00 Generating and Dealing With Microbiome Data: The Bad, The Weird, and The Ugly - Nicole Vega (Emory University)   ()
10:00 Amino acid auxotrophies are ubiquitous in the human gut microbiome - Svenja Busche (Institute of Human Nutrition and Food Science, Kiel University)   ()
10:30 --- Coffee Break ---
11:00
Keynote - Simon Van Vliet (SNSF Ambizione fellow Biozentrum | University of Basel Infection Biology ) (until 12:00) ()
11:00 The role of multilevel selection in host microbiome evolution - Simon Van Vliet (SNSF Ambizione fellow Biozentrum | University of Basel Infection Biology)   ()
09:00
Keynote - Christoph Kaleta (CAU Kiel) (until 10:00) ()
09:00 Constraint-based modeling of microbial communities - Christoph Kaleta (CAU Kiel)   ()
10:00 Stepwise evolution of genome-scale metabolic networks in complex microbial communities - Ghjuvan Grimaud (APC Microbiome/Teagasc)   ()
10:30 --- Coffee Break ---
11:00 Designing novel microbial therapies for atopic dermatitis using mechanistic modelling - Jamie Lee (Imperial College London)   ()
11:30 Annotation-free discovery of functional microbiomes units - Xiaoyu Shan (Massachusetts Institute of Technology )   ()
PM
12:00 --- Lunch ---
13:00
Discussion (until 13:45) ()
13:45
Keynote - Jacopo Grilli (The Abdus Salam International Centre for Theoretical Physics ) (until 14:45) ()
13:45 What is typical in microbial communities? True statistical patterns and wrong macroecological models in microbiome dynamics - Jacopo Grilli (The Abdus Salam International Centre for Theoretical Physics)   ()
14:45 Stochastic Lotka-Volterra model reproduce macroecological patterns - José Manuel Camacho Mateu (Carlos III University of Madrid )   ()
15:15 --- Coffee Break ---
15:45 Microbial cooperation in public good games under environmental flows - João Pedro Valeriano Miranda (Institute for Theoretical Physics, State University of São Paulo, Brazil )   ()
16:15 Investigating the eco-evolutionary tunnels for establishing two species cooperative communities - Seyfullah Kotil (Bahcesehir University )   ()
16:45
Poster (until 18:15) ()
18:15
Discussion (until 19:15) ()
19:15 --- Dinner ---
20:15 General Discussion   ()
12:00 --- Lunch ---
13:00 Scale-dependent signatures of microbial co-occurrence revealed via multilayer network analysis - Geut Galai (Ben-Gurion University )   ()
13:30 Quantification of metabolic niche occupation over time in a Baltic Sea bacterial community using a diffusion map approach - Jana Massing (Helmholtz Institute for Functional Marine Biodiversity at the University of Oldenburg (HIFMB))   ()
14:00 --- Walk to Prinzeninsel ---
16:45
Discussion (until 17:45) ()
17:45
Discussion (until 19:15) ()
19:15 --- Dinner at Restaurant ---
20:15 General Discussion   ()
12:00 --- Lunch ---
13:00
Keynote - Claude Loverdo (Sorbonne Universite / CNRS ) (until 14:00) ()
13:00 Bacteria in the digestive tract : stochastic models of population dynamics, for inferring colonization probability and immunity-induced clustering; and evolution in a flow. - Claude Loverdo (Sorbonne Universite / CNRS)   ()
14:00 Trade-offs between colonization and survival enable E. coli coexistence - Thibaut Morel-Journel (CIRB, CNRS )   ()
14:30 --- Coffee Break ---
15:00
Keynote - Jonas Cremer (Stanford University) (until 16:00) ()
15:00 Grow with the flow - How gut motility and intestinal fluid turnover shape the accumulation of bacterial biomass along the human large intestine - Jonas Cremer (Stanford University)   ()
16:00 Evolutionary modeling of microbiome community assembly in the context of human pre-cancer progression - Caitlin Guccione (University of California, San Diego )   ()
16:30
Poster (until 18:00) ()
18:00
Discussion (until 19:00) ()
19:00 Conclusion   ()
19:15 --- Good-Bye Barbecue ---