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OMEROthon

6–8 May 2026
Max Planck Institute for Evolutionary Biology
Europe/Berlin timezone

Ein neuer Workshop wurde angelegt.

Contribution List

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  1. 1. Welcome and Introductions
    06/05/2026, 10:00
  2. 2. Image acquisition
    06/05/2026, 10:15
    • Image acquisition and acquisition metadata
      • Light parameters: exposure and transmission
      • Image parameters: pixel size and intensity
    • Image formats
      • Brief Bio-Formats introduction
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  3. 3. OMERO overview
    06/05/2026, 10:45
    • How to access OMERO on the web and on the desktop
    • How to organize your images: Projects and Datasets
    • Adding meaning to your images: Annotations with tags, key-value pairs, files, comments, and tables
    • Searching and filtering in and across projects and datasets
    • Loading images into jupyter, R Studio, ImageJ, and napari
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  4. 4. Demo and Exercise: Loading image data into OMERO
    06/05/2026, 11:30
  5. 5. Demo and Exercise: Image organization, annotations, search, and filter
    06/05/2026, 13:30
  6. 8. Special topics and discussion
    06/05/2026, 15:00
  7. 9. Recap
    07/05/2026, 10:00
  8. 11. Image processing
    07/05/2026, 10:15
  9. 12. Demo and Exercise: Image processing
    07/05/2026, 13:30
  10. 13. Building publication ready figures with OMERO.figure
    07/05/2026, 14:15
  11. 14. Visualization of image analysis results: OMERO.parade
    07/05/2026, 15:00
  12. 15. Special topics and discussion
    07/05/2026, 15:45
  13. 16. Users present their data
    08/05/2026, 10:00
  14. 17. Metadata spreadsheet hackathon
    08/05/2026, 11:00
    • Participants brainstorm and implement metadata templates in excel
    • Presentation of results
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  15. 18. Work on your own data
    08/05/2026, 13:30

    Participants work independently or in small teams to import, organize, annotate, analyse, and visualize their data

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